FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane4_Index13_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 20198926 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCTGG | 4241975 | 2.5699923 | 5.820012 | 1 |
| GAAGA | 4277325 | 2.5201778 | 5.127085 | 2 |
| CTTCT | 4351185 | 2.518289 | 5.2310543 | 1 |
| AAGAA | 4315100 | 2.4960196 | 5.1708426 | 2 |
| CTGGA | 4043280 | 2.4103475 | 8.423991 | 1 |
| TCCAG | 3926125 | 2.3352106 | 5.0867095 | 2 |
| CTCCT | 3898885 | 2.3034956 | 6.5035357 | 1 |
| CTGGG | 3688200 | 2.2395568 | 7.8076234 | 1 |
| CAGGA | 3702960 | 2.2173073 | 5.4892855 | 1 |
| CTTCA | 3777475 | 2.1959915 | 5.495626 | 1 |
| CTCCA | 3646960 | 2.164258 | 7.121756 | 1 |
| CCCAG | 3544105 | 2.1518772 | 6.738333 | 1 |
| CAGAA | 3517810 | 2.0679855 | 5.058716 | 1 |
| CTCTG | 3377855 | 2.0001929 | 5.946408 | 1 |
| CTGGC | 3117790 | 1.8889072 | 5.079554 | 1 |
| TGGAA | 3130240 | 1.8361388 | 5.2189007 | 2 |
| CTGAA | 3119460 | 1.8256751 | 5.176758 | 1 |
| CTCAG | 2901930 | 1.7260321 | 5.9134398 | 1 |
| CTTTG | 2916465 | 1.6917597 | 5.013183 | 1 |
| CTTGG | 2743965 | 1.6285208 | 5.2102404 | 1 |